Computational Molecular Biology

Protein Structural Motifs

Doug Brutlag

May 15, 2008

  • Literature References
  • Slides (HTML)
  • Slides (PDF)
  • Fold Libraries Resources
    • SCOP: Structural Classification of Proteins
    • FSSP database
    • CATH classification
    • NCBI Structure Group
    • Sequence-Structure Annotated Alignments
  • Protein Viewing Tools
    • Protein Explorer, Chime and RasMol (Windows only)
    • NCBI CN3D
    • PyMOL
    • Swiss-PDB Viewer
    • KiNG Kinetic Image Next Generation
  • Protein Superposition Tools
    • LOCK2: Hierarchical Protein Structure Superposition
    • FoldMiner
    • VAST Vector Alignment Search Tool
    • DALI Structural Alignment
  • Back to Biochem 218 Syllabus