Computational Molecular Biology

Discrete Protein Sequence Motifs

Doug Brutlag

May 13, 2008

• Final Homework Assignment 7 (due May 15, 2008)
• Literature References
• Slides (PDF)
• Slides (HTML)
• Internet Resources
  • Blocks Server
  • Block Maker
  • Profile Scan
  • pFAM database at Wash. U (Eddy)
  • pFAM database at Sanger Center (UK)
  • SAM: Sequence Alignment and Modeling System at UCSC
  • HMMER -- Hidden Markov model software at Wash. U.
  • PatScan
  • Prosite Scan (Expasy)

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