Computational Molecular Biology

Genome Databases

Doug Brutlag

April 8, 2008

Slides (HTML)

Slides (PDF)

Human Genome Sequence Publications

Public Human Genome Project Publication In Nature 15 February 2001

Commercial Human Genome Sequence Published in Science 16 February 2001

Genomic Web Resources

National Human Genome Reseach Insitute http://www.nhgri.nih.gov/

NCBI Human Genome Resources http://www.ncbi.nlm.nih.gov/genome/guide/human/

NCBI Entrez Gene Database http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene

NCBI Unigene Database http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=unigene

NCBI UniSTS Databases http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=unists

NCBI OMIM Database http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=OMIM

Human Gene Mutation Database http://www.hgmd.cf.ac.uk/ac/

Human Genome Variation Society http://www.hgvs.org/

Gene Tests http://www.genetests.org/

EBI ENSEMBL Human Genome Server http://www.ensembl.org/

Keeping up with the Human Genome: Ensembl Presented by Tim Hubbard at Googleplex

UCSC Genome Browser http://genome.ucsc.edu/

UCSC Proteome Browser http://genome.ucsc.edu/cgi-bin/pbGateway

UCSC Tutorials http://www.openhelix.com/downloads/ucsc/ucsc_home.shtml

TIGR Genome Database Page http://www.tigr.org/tdb/mdb/mdbcomplete.html

Ensembl Genome Home Page http://www.ensembl.org/

Ensembl Human Genome Page http://www.ensembl.org/Homo_sapiens/

Saccharomyces Genome Database http://www.yeastgenome.org/

Drosophila Flybase Genome Database http://flybase.bio.indiana.edu/

C. elegans Wormbase Genome Database http://www.wormbase.org/

Mouse Genome Database (Jackson Labs) http://www.informatics.jax.org/

Comparative Genomics

NCBI Homologene Database http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=homologene

Ensembl PECAN Alignments http://www.ensembl.org/info/data/compara/pecan.html

UCSC ENCODE Project http://genome.ucsc.edu/ENCODE/